Proksee Tools
Below is the current list of tools available to Proksee projects. To use a tool, first start a project on the New Project page and then start your tool of interest from the Tool Panel in the Sidebar.
Tool List
CGView Builder1.1.3Builds the initial CGView JSON file from a GenBank, EMBL, FASTA or raw sequence.
BLAST Formatter1.0.3Color existing BLAST features by percent identity and sort BLAST tracks by similarity.
Plots1.0.0Upload plot data from a text file.
CRISPR/Cas Finder1.1.0Find CRISPR arrays and their associated Cas proteins.
ORFs1.0.0Find Open Reading Frames (ORFs)
pLannotate1.1.0Annotate engineered plasmids with pLannotate. Only works with sequences less than 50,000 bp.
Proksee Assemble1.3.0Assemble sequencing reads with Proksee Assemble.
FastANI1.1.0Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
GC Skew1.0.1Add a GC Skew plot.
Phigaro1.0.1Detect and annotate prophage regions.
mobileOG-db1.1.3Find mobile genetic elements (MGEs).
Features1.0.0Upload feature data from a text file.
Alien Hunter1.1.0Predict putative Horizontal Gene Transfer (HGT) events.
Prokka1.1.0Annotate the genome sequence with Prokka.
BLAST1.2.0Perform a BLAST comparision with another genome sequence.
CARD Resistance Gene Identifier1.2.0The Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI)
VirSorter1.1.1Detect dsDNA and ssDNA virus genomes (phage).
GC Content1.0.1Add a GC Content plot.