Proksee Tools
Below is the current list of tools available to Proksee projects. To use a tool, first start a project on the New Project page and then start your tool of interest from the Tool Panel in the Sidebar.
Tool List
FastANI1.1.0Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
MITOS1.1.1Annotate metazoan mitochondrial genomes with MITOS 2. Limited to genomes up to 50 kbp and 10 contigs.
Bakta1.0.0Annotate the genome sequence with Bakta.
Proksee Assemble1.3.0Assemble sequencing reads with Proksee Assemble.
Plots1.0.0Upload plot data from a text file.
Track List Caption1.1.0Create a track figure caption describing all the visible tracks.
BLAST Formatter1.0.3Color existing BLAST features by percent identity and sort BLAST tracks by similarity.
Alien Hunter1.1.0Predict putative Horizontal Gene Transfer (HGT) events.
BLAST1.3.1Perform a BLAST comparision with another genome sequence.
VirSorter1.1.1Detect dsDNA and ssDNA virus genomes (phage).
Features1.0.0Upload feature data from a text file.
CRISPR/Cas Finder1.1.0Find CRISPR arrays and their associated Cas proteins.
CARD Resistance Gene Identifier1.2.0The Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI)
pLannotate1.1.0Annotate engineered plasmids with pLannotate. Only works with sequences less than 50,000 bp.
Phigaro1.0.1Detect and annotate prophage regions.
ORFs1.0.0Find Open Reading Frames (ORFs)
mobileOG-db1.1.3Find mobile genetic elements (MGEs).
Prokka1.1.1Annotate the genome sequence with Prokka.
GC Content1.0.2Add a GC Content plot.
GC Skew1.0.2Add a GC Skew plot.
CGView Builder1.1.6Builds the initial CGView JSON file from a GenBank, EMBL, FASTA or raw sequence.