Proksee Tools
Below is the current list of tools available to Proksee projects. To use a tool, first start a project on the New Project page and then start your tool of interest from the Tool Panel in the Sidebar.
Tool List
Track List Caption1.1.0Create a track figure caption describing all the visible tracks.
Bakta1.0.0Annotate the genome sequence with Bakta.
Prokka1.1.1Annotate the genome sequence with Prokka.
MITOS1.1.3Annotate metazoan mitochondrial genomes with MITOS 2. Limited to genomes up to 50 kbp and 10 contigs.
BLAST Formatter1.0.3Color existing BLAST features by percent identity and sort BLAST tracks by similarity.
FastANI1.1.0Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
Plots1.0.0Upload plot data from a text file.
Alien Hunter1.1.0Predict putative Horizontal Gene Transfer (HGT) events.
GC Skew1.0.2Add a GC Skew plot.
VirSorter1.1.1Detect dsDNA and ssDNA virus genomes (phage).
pLannotate1.1.0Annotate engineered plasmids with pLannotate. Only works with sequences less than 50,000 bp.
Proksee Assemble1.3.0Assemble sequencing reads with Proksee Assemble.
mobileOG-db1.1.3Find mobile genetic elements (MGEs).
CGView Builder1.1.6Builds the initial CGView JSON file from a GenBank, EMBL, FASTA or raw sequence.
CRISPR/Cas Finder1.1.0Find CRISPR arrays and their associated Cas proteins.
Features1.0.0Upload feature data from a text file.
GC Content1.0.2Add a GC Content plot.
ORFs1.0.0Find Open Reading Frames (ORFs)
CARD Resistance Gene Identifier1.2.1The Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI)
BLAST1.3.1Perform a BLAST comparision with another genome sequence.
Phigaro1.0.1Detect and annotate prophage regions.