Proksee Tools
Below is the current list of tools available to Proksee projects. To use a tool, first start a project on the New Project page and then start your tool of interest from the Tool Panel in the Sidebar.
Tool List
pLannotate1.1.0Annotate engineered plasmids with pLannotate. Only works with sequences less than 50,000 bp.
GC Content1.0.1Add a GC Content plot.
Proksee Assemble1.3.0Assemble sequencing reads with Proksee Assemble.
VirSorter1.1.1Detect dsDNA and ssDNA virus genomes (phage).
ORFs1.0.0Find Open Reading Frames (ORFs)
GC Skew1.0.1Add a GC Skew plot.
FastANI1.1.0Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
CGView Builder1.1.2Builds the initial CGView JSON file from a GenBank, EMBL, FASTA or raw sequence.
CRISPR/Cas Finder1.1.0Find CRISPR arrays and their associated Cas proteins.
Phigaro1.0.1Detect and annotate prophage regions.
mobileOG-db1.1.2Find mobile genetic elements (MGEs).
Alien Hunter1.1.0Predict putative Horizontal Gene Transfer (HGT) events.
Plots1.0.0Upload plot data from a text file.
Features1.0.0Upload feature data from a text file.
BLAST1.1.3Perform a BLAST comparision with another genome sequence.
Prokka1.1.0Annotate the genome sequence with Prokka.
CARD Resistance Gene Identifier1.1.1The Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI)