Proksee Tools
Below is the current list of tools available to Proksee projects. To use a tool, first start a project on the New Project page and then start your tool of interest from the Tool Panel in the Sidebar.
Tool List
NameVersionDescription
VirSorter1.1.1Detect dsDNA and ssDNA virus genomes (phage).
Prokka1.1.0Annotate the genome sequence with Prokka.
GC Content1.0.1Add a GC Content plot.
GC Skew1.0.1Add a GC Skew plot.
Alien Hunter1.1.0Predict putative Horizontal Gene Transfer (HGT) events.
Plots1.0.0Upload plot data from a text file.
mobileOG-db1.1.2Find mobile genetic elements (MGEs).
ORFs1.0.0Find Open Reading Frames (ORFs)
CRISPR/Cas Finder1.1.0Find CRISPR arrays and their associated Cas proteins.
Proksee Assemble1.3.0Assemble sequencing reads with Proksee Assemble.
FastANI1.1.0Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
BLAST1.1.2Perform a BLAST comparision with another genome sequence.
CGView Builder1.1.0Builds the initial CGView JSON file from a GenBank, EMBL, FASTA or raw sequence.
Features1.0.0Upload feature data from a text file.
CARD Resistance Gene Identifier1.1.1The Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI)