Proksee Tools
Below is the current list of tools available to Proksee projects. To use a tool, first start a project on the New Project page and then start your tool of interest from the Tool Panel in the Sidebar.
Tool List
NameVersionDescription
Alien Hunter1.3.0Predict putative Horizontal Gene Transfer (HGT) events. Limited to 1 contig between 20,000 and 1,000,000 bp.
Bakta1.1.0Annotate the genome sequence with Bakta.
BLAST1.4.1Perform a BLAST comparision with another genome sequence.
BLAST Formatter1.0.3Color existing BLAST features by percent identity and sort BLAST tracks by similarity.
CARD Resistance Gene Identifier1.2.1The Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI)
CRISPR/Cas Finder1.1.0Find CRISPR arrays and their associated Cas proteins.
FastANI1.1.0Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
Features2.0.3Upload feature data from a text file (e.g. CSV, GFF3, GTF, BED).
GC Content1.0.2Add a GC Content plot.
GC Skew1.0.2Add a GC Skew plot.
Map Builder2.0.5Builds the initial CGView JSON file from a GenBank, EMBL, FASTA or raw sequence.
MITOS1.1.3Annotate metazoan mitochondrial genomes with MITOS 2. Limited to genomes up to 50 kbp and 10 contigs.
mobileOG-db1.1.3Find mobile genetic elements (MGEs).
ORFs1.0.1Find Open Reading Frames (ORFs)
PHASTEST1.0.1Detect and annotate prophage regions.
Phigaro1.1.0Detect and annotate prophage regions.
pLannotate1.1.0Annotate engineered plasmids with pLannotate. Only works with sequences less than 50,000 bp.
Plots1.0.0Upload plot data from a text file.
Prokka1.2.0Annotate the genome sequence with Prokka.
Proksee Assemble1.3.0Assemble sequencing reads with Proksee Assemble.
Track List Caption2.0.0Create a track figure caption describing all the visible tracks. The caption is automatically updated as tracks are added, edited, or removed.
VirSorter1.1.1Detect dsDNA and ssDNA virus genomes (phage).