Proksee Tools
Below is the current list of tools available to Proksee projects. To use a tool, first start a project on the New Project page and then start your tool of interest from the Tool Panel in the Sidebar.
Tool List
ORFs1.0.0Find Open Reading Frames (ORFs)
Proksee Assemble1.3.0Assemble sequencing reads with Proksee Assemble.
pLannotate1.1.0Annotate engineered plasmids with pLannotate. Only works with sequences less than 50,000 bp.
CRISPR/Cas Finder1.1.0Find CRISPR arrays and their associated Cas proteins.
Plots1.0.0Upload plot data from a text file.
GC Skew1.0.1Add a GC Skew plot.
FastANI1.1.0Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
Alien Hunter1.1.0Predict putative Horizontal Gene Transfer (HGT) events.
Phigaro1.0.1Detect and annotate prophage regions.
mobileOG-db1.1.2Find mobile genetic elements (MGEs).
CGView Builder1.1.2Builds the initial CGView JSON file from a GenBank, EMBL, FASTA or raw sequence.
BLAST1.1.3Perform a BLAST comparision with another genome sequence.
Prokka1.1.0Annotate the genome sequence with Prokka.
Features1.0.0Upload feature data from a text file.
GC Content1.0.1Add a GC Content plot.
CARD Resistance Gene Identifier1.2.0The Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI)
VirSorter1.1.1Detect dsDNA and ssDNA virus genomes (phage).