| Tools : Phigaro | |
|---|---|
| Public ID | phigaro |
| Short Name | Phigaro |
| Version | 1.1.0 |
| Description | Detect and annotate prophage regions. |
| Software | Phigaro 2.4.0 |
| Citation | Starikova EV, Tikhonova PO, Prianichnikov NA, Rands CM, Zdobnov EM, et al.. Phigaro: high-throughput prophage sequence annotation. Bioinformatics. 2020 Jun 1;36(12):3882-3884. |
| Category | Mobile Genetic Elements |
| Added By | Jason R. Grant |
| Worker | server |
| Queue | small |
| Created At | 2023-01-24 22:52:27 UTC |
| Updated At | 2025-02-25 20:07:52 UTC |
Change Log
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Prokan Tool Changelog: phigaro
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v1.1.0 - 2025-02-24
- Update to Phigaro 2.4.0
- Fixed a bug with gff3 and bed files formats: prophage coordinates were shifted by 1 nucleotide upstream in versions phigaro <= 2.3.0.
- Added prophage IDs across outputs to improve compatibility between files.
- Feature types updated to use GenBank types for consistency:
- Phigaro -> misc_feature
- "Phigaro - Category" -> CDS
- Changed name of "group" meta data to "category"
- Features with PVOGs with unknown function are put into category/group Hypothetical
- Features with no PVOG are put into category/group Unknown
v1.0.1 - 2023-03-16
- Validate that at least one contig is larger than 20,000 bp
v1.0.0 - 2023-02-21
- Initial Release
- Phigaro 2.3.0
- DB Date: 2017-08-18 (http://download.ripcm.com/phigaro/)