| Tools : BLAST | |
|---|---|
| Public ID | blast |
| Short Name | BLAST |
| Version | 1.5.0 |
| Description | Perform a BLAST comparision with another genome sequence. |
| Software | BLAST+ 2.16.0 |
| Citation | Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990) "Basic local alignment search tool." J. Mol. Biol. 215:403-410. |
| Category | Sequence Comparison |
| Added By | Jason R. Grant |
| Worker | server |
| Queue | medium |
| Created At | 2022-01-25 21:00:54 UTC |
| Updated At | 2025-04-08 21:04:52 UTC |
Change Log
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Prokan Tool Changelog: BLAST
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v1.5.0 - 2025-04-08
- Upgrade BLAST to 2.16.0 (from 2.15.0)
- Added metadata selection
- Changed meta key 'identity' to 'percent_identity'
- metadata: subject, percent_identity, mismatches, alignment_length, gap_openings, subject_start, subject_stop, evalue, bit_score
v1.4.1 - 2024-11-21
- Fix fasta file symlink issue with docker
v1.4.0 - 2024-11-20
- Upgrade BLAST to 2.15.0
- Use docker instead of conda
v1.3.3 - 2024-11-08
- Improve CDS extraction (include pseudo genes)
- CDS and ORFs more consistent with Sequence Selector (Download -> Sequence)
- Add comparison help
v1.3.3 - 2024-11-01
- Changed: enclosed hits of equal score are now skipped
- Fixed: CDS translations for features with multiple locations or a translation property
v1.3.2 - 2024-10-25
- Fix resetting dialog when changen file or query
v1.3.1 - 2023-10-19
- Add genetic code numbers to select list
v1.3.0 - 2023-10-02
- Removed: ability to do tblastx (Translated DNA vs Translated DNA). It's too slow.
- Changed: e-value cutoff from 0.1 to 0.0001
v1.2.0 - 2023-09-15
- Added: Ability to skip added hits that are enclosed by higher scoring hits
v1.1.6 - 2023-09-11
- Improved: Set track drawOrder to 'score'
v1.1.5 - 2023-08-31
- Use job name as default for track/legend names
v1.1.4 - 2023-06-21
- Fixed: Blast results missing CDS position details because feature name had spaces. This caused the fasta id from being parsed correctly
- Added: Warning if fasta id position syntax can not be parsed.
v1.1.3 - 2023-02-19
- Changed: by default no longer separate results by strand
v1.1.2 - 2023-01-27
- Fixed: filetype detection
- Improved: Remove non word characters from raw sequences
v1.1.1 - 2023-01-13
- Fix bit score: integer to float
- Change meta data key: score -> bit_score
v1.1.0 - 2022-11-24
- Add ReportCard
v1.0.1 - 2022-03-30
- blastn results are now strand specific
v1.0.0 - 2022-01-20
- Upgrade BLAST to 2.12.0
v0.1.0 - 2021-02-14
- Initial Release