Tools : CARD Resistance Gene Identifier | |
---|---|
Public ID | card |
Short Name | CARD RGI |
Version | 1.2.1 |
Description | The Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI) |
Software | RGI 6.0.3 |
Citation | Alcock et al. 2023. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Research, 51(D1):D690-D699 |
Category | Genome Annotation |
Added By | Jason R. Grant |
Worker | server |
Queue | medium |
Created At | 2022-01-25 21:00:54 UTC |
Updated At | 2024-03-05 20:38:36 UTC |
Change Log
--------------------------------------------------------------------------------
Prokan Tool Changelog: CARD RGI
--------------------------------------------------------------------------------
v1.2.1 - 2024-03-05
- Upgrade CARD RGI to 6.0.3
- CARD Changes:
- adds hit coordinates to the start and end of gene coordinates
- adds antibiotics to the tab-separated output file
v1.2.0 - 2023-06-07
- Upgrade CARD RGI to 6.0.2
- CARD change: Removed option --exclude_nudge and replaced with --include_nudge for RGI main so nudged results no longer included in default RGI main output.
- Use docker instead of conda
- Updated citation to 2023 paper
v1.1.1 - 2022-12-16
- Fix contig id regex
v1.1.0 - 2022-11-24
- Add ReportCard
v1.0.0 - 2022-01-20
- Upgrade CARD RGI to 5.2.1
- Removes large output.json file after analysis
v0.1.0 - 2021-02-14
- Initial Release