| Tools : CARD Resistance Gene Identifier | |
|---|---|
| Public ID | card |
| Short Name | CARD RGI |
| Version | 1.3.0 |
| Description | The Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI) |
| Software | RGI 6.0.3 |
| Citation | Alcock et al. 2023. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Research, 51(D1):D690-D699 |
| Category | Genome Annotation |
| Added By | Jason R. Grant |
| Worker | server |
| Queue | medium |
| Created At | 2022-01-25 21:00:54 UTC |
| Updated At | 2025-04-08 21:04:54 UTC |
Change Log
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Prokan Tool Changelog: CARD RGI
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v1.3.0 - 2025-04-08
- Feature types updated to use GenBank types for consistency:
- CARD -> CDS
- Added metadata selection
- metadata: cutoff, pass_bitscore, best_hit_bitscore, best_hit_aro, best_identities, aro, model_type, snps_in_best_hit_aro, other_snps, drug_class, resistance_mechanism, amr_gene_family, nudged, note, antibiotics
v1.2.1 - 2024-03-05
- Upgrade CARD RGI to 6.0.3
- CARD Changes:
- adds hit coordinates to the start and end of gene coordinates
- adds antibiotics to the tab-separated output file
v1.2.0 - 2023-06-07
- Upgrade CARD RGI to 6.0.2
- CARD change: Removed option --exclude_nudge and replaced with --include_nudge for RGI main so nudged results no longer included in default RGI main output.
- Use docker instead of conda
- Updated citation to 2023 paper
v1.1.1 - 2022-12-16
- Fix contig id regex
v1.1.0 - 2022-11-24
- Add ReportCard
v1.0.0 - 2022-01-20
- Upgrade CARD RGI to 5.2.1
- Removes large output.json file after analysis
v0.1.0 - 2021-02-14
- Initial Release