Tools : CARD Resistance Gene Identifier
Public IDcard
Short NameCARD RGI
DescriptionThe Comprehensive Antibiotic Resistance Database (CARD) Resistance Gene Identifier (RGI)
SoftwareRGI 6.0.3
CitationAlcock et al. 2023. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Research, 51(D1):D690-D699
CategoryGenome Annotation
Added ByJason R. Grant
Created At2022-01-25 21:00:54 UTC
Updated At2024-03-05 20:38:36 UTC
Change Log
-------------------------------------------------------------------------------- Prokan Tool Changelog: CARD RGI -------------------------------------------------------------------------------- v1.2.1 - 2024-03-05 - Upgrade CARD RGI to 6.0.3 - CARD Changes: - adds hit coordinates to the start and end of gene coordinates - adds antibiotics to the tab-separated output file v1.2.0 - 2023-06-07 - Upgrade CARD RGI to 6.0.2 - CARD change: Removed option --exclude_nudge and replaced with --include_nudge for RGI main so nudged results no longer included in default RGI main output. - Use docker instead of conda - Updated citation to 2023 paper v1.1.1 - 2022-12-16 - Fix contig id regex v1.1.0 - 2022-11-24 - Add ReportCard v1.0.0 - 2022-01-20 - Upgrade CARD RGI to 5.2.1 - Removes large output.json file after analysis v0.1.0 - 2021-02-14 - Initial Release