Tools : Assembly Variant Finder
Public IDassembly_variant_finder
Short NameAssembly Variant Finder
Version1.0.2
DescriptionFind project genome variants relative to a reference, with an interactive report and optional SnpEff consequences.
SoftwareAssembly Variant Finder 3.1.0; minimap2 2.30; SnpEff 5.4c; bcftools/HTSlib 1.21
Citations
CategorySequence Comparison
Added ByPaul Stothard
Workerserver
Queuemedium
Created At2026-10-21 19:18:48 UTC
Updated At2026-10-22 18:24:54 UTC
Change Log
1.0.2 - 2026-10-22 - Update report and dialog start UI. 1.0.1 - 2026-10-20 - Update assembly-variant-finder from v3.0.5 to v3.1.0. - Display reference annotation tracks and CDS amino-acid translations. - Prioritize PASS calls in summaries, open the sequence viewer at the full contig, and show density summaries for crowded features. - Improve compact report layout, mobile controls, and sequence navigation. - Keep the sequence viewer steady during zoom, pan, and Fit, and align report controls and reference-sequence details. - Reduce storage for new jobs with compact output, retaining every call and consequence in the report and compressed VCF, plus indexed VCF/BED downloads. - Load large interactive reports in smaller data blocks without truncating records. - Choose the alignment preset automatically by default, with manual choices remembered and resettable in the start dialog. - Show full reference-feature annotations in accessible hover cards. - Preserve saved display settings in standalone reports through v3.1.0, including reports that take longer to load. 1.0.0 - 2026-10-14 - Compare project contigs against an uploaded or NCBI reference using Assembly Variant Finder 3.0.5. - Preserve reference GenBank annotations and support FASTA plus GFF3 for SnpEff. - Add reference-coordinate reports, complete downloads, and saved interactive display settings. - Treat unsuitable comparisons as successful assessments and preserve completed results on failure.