| Tools : Assembly Variant Finder | |
|---|---|
| Public ID | assembly_variant_finder |
| Short Name | Assembly Variant Finder |
| Version | 1.0.2 |
| Description | Find project genome variants relative to a reference, with an interactive report and optional SnpEff consequences. |
| Software | Assembly Variant Finder 3.1.0; minimap2 2.30; SnpEff 5.4c; bcftools/HTSlib 1.21 |
| Citations | |
| Category | Sequence Comparison |
| Added By | Paul Stothard |
| Worker | server |
| Queue | medium |
| Created At | 2026-10-21 19:18:48 UTC |
| Updated At | 2026-10-22 18:24:54 UTC |
Change Log
1.0.2 - 2026-10-22
- Update report and dialog start UI.
1.0.1 - 2026-10-20
- Update assembly-variant-finder from v3.0.5 to v3.1.0.
- Display reference annotation tracks and CDS amino-acid translations.
- Prioritize PASS calls in summaries, open the sequence viewer at the full contig, and show density summaries for crowded features.
- Improve compact report layout, mobile controls, and sequence navigation.
- Keep the sequence viewer steady during zoom, pan, and Fit, and align report controls and reference-sequence details.
- Reduce storage for new jobs with compact output, retaining every call and consequence in the report and compressed VCF, plus indexed VCF/BED downloads.
- Load large interactive reports in smaller data blocks without truncating records.
- Choose the alignment preset automatically by default, with manual choices remembered and resettable in the start dialog.
- Show full reference-feature annotations in accessible hover cards.
- Preserve saved display settings in standalone reports through v3.1.0, including reports that take longer to load.
1.0.0 - 2026-10-14
- Compare project contigs against an uploaded or NCBI reference using Assembly Variant Finder 3.0.5.
- Preserve reference GenBank annotations and support FASTA plus GFF3 for SnpEff.
- Add reference-coordinate reports, complete downloads, and saved interactive display settings.
- Treat unsuitable comparisons as successful assessments and preserve completed results on failure.